Publications

Articles

• I.M. Zakiewicz, P. Majka, D.K. Wojcik, J.G. Bjaalie, T.B. Leergaard Three-dimensional histology volume reconstruction of axonal tract tracing data: exploring topographical organization in subcortical projections from rat barrel cortex, Plos ONE, submitted (2015)
• S. Ray, C. Chintaluri, U. S. Bhalla, D.K. Wójcik: NSDF: Neuroscience Simulation Data Format, Neuroinformatics, submitted (2015)
• T.V. Ness, H.C. Chintaluri, J. Potworowski, S. Łęski, H. Głąbska, D.K. Wójcik, G.T. Einevoll: Modelling and analysis of neural electrical potentials recorded in multielectrode arrays (MEAs), Neuroinformatics, (2015)
• Independent components of neural activity carry information on individual populations, H. Głąbska, J. Potworowski, S. Łęski, D. K. Wójcik PLOS ONE 9 (2014), e105071
• "Current Source Density (CSD) analysis" Daniel K. Wójcik in Encyclopedia of Computational Neuroscience (2014) Springer. [preprint]
  
• "3D Brain Atlas Reconstructor service - online repository of three-dimensional models of brain structures" Piotr Majka, Jakub Kowalski, Natalia Chlodzinska, Daniel K. Wójcik Neuroinformatics 11 (2013) 507-518 DOI: 10.1007/s12021-013-9199-9
• "Reward learning requires activity of matrix metalloproteinase-9 in the central amygdala" Ewelina Knapska, Victoria Lioudyno, Anna Kiryk, Marta Mikosz, Tomasz Gorkiewicz, Piotr Michaluk, Maciej Gawlak, Mayank Chaturvedi, Gabriela Mochol, Marcin Balcerzyk, Daniel K Wójcik, Grzegorz M Wilczyński Leszek Kaczmarek
  J. Neuroscience 33 (2013) 14591-14600
• "Reciprocal inhibition and slow calcium decay in perigeniculate interneurons explain changes of spontaneous firing of thalamic cells caused by cortical inactivation" Jacek Rogala, Wioletta Waleszczyk, Szymon Łęski, Andrzej Wróbel, Daniel K. Wójcik
  Journal of Computational Neuroscience 34 (2013) 461-476, doi:10.1007/s10827-012-0430-8
• "Common Atlas Format and 3D Brain Atlas Reconstructor, the infrastructure for constructing 3D brain atlases" Piotr Majka, Ewa Kublik, Grzegorz Furga, Daniel K. Wójcik
  Neuroinformatics 10 (2012) 181-197 doi: 10.1007/s12021-011-9138-6
• "Kernel Current Source Density Method" Jan Potworowski, Wit Jakuczun, Szymon Łęski, Daniel K. Wójcik
  Neural Computation 24 (2012) 541-575. doi:10.1162/NECO_a_00236
  
• "Cognitive abilities of Alzheimer’s disease transgenic mice are modulated by social context and circadian rhythm" Anna Kiryk, Gabriela Mochol, Robert K. Filipkowski, Marcin Wawrzyniak, Victoria Lioudyno, Ewelina Knapska, Tomasz Gorkiewicz, Marcin Balcerzyk, Szymon Łęski, Fred Van Leuven, Hans Peter Lipp, Daniel K Wójcik, Leszek Kaczmarek
  Current Alzheimer Research 8 (2011) 883-892
  
• "Inverse Current Source Density method in two dimensions: Inferring neural activation from multielectrode recordings" Szymon Łęski, Klas H Pettersen, Beth Tunstall, Gaute T Einevoll, John Gigg, Daniel K Wójcik
  Neuroinformatics 9 (2011) 401-425
  supplementary materials
• "Differential effects produced by ketamine on oscillatory activity recorded in the rat hippocampus and nucleus accumbens" Mark J Hunt, Monika Falinska, Szymon Łęski, Daniel K Wójcik, Stefan Kasicki
  Journal of Psychopharmacology 25 (2011) 808-821
  
• "Variability of visual responses of superior colliculus neurons corresponds to their velocity preferences" Gabriela Mochol, Daniel K Wójcik, Marek Wypych, Andrzej Wróbel, Wioletta J Waleszczyk
  Journal of Neuroscience 30 (2010) 3199-3209
  
• "Extracting functional components of neural dynamics with Independent Component Analysis and inverse Current Source Density" Szymon Łęski, Ewa Kublik, Daniel A. Świejkowski, Andrzej Wróbel, Daniel K. Wójcik
  Journal of Computational Neuroscience 29 (2010) 459-473
  doi:10.1007/s10827-009-0203-1
  supplementary figures + independent component viewer (Matlab software; includes data)
• "Modeling extracellular potentials" Gaute T Einevoll, Daniel K. Wójcik, Alain Destexhe
  Journal of Computational Neuroscience 29 (2010) 367-369
  doi:10.1007/s10827-010-0283-y
• "Current source density reconstruction from incomplete data" Daniel K. Wójcik, Szymon Łęski
  Neural Computation 22 (2010) 48-60
  
• "Direct estimation of inhomogenous Markov interval models of spike-trains" Daniel K. Wójcik, Gabriela Mochol, Wit Jakuczun, Marek Wypych, Wioletta Waleszczyk
  Neural Computation 21 (2009) 2105-2113
• "Inferring coupling strength from event-related dynamics" Szymon Łęski, Daniel K. Wójcik
  Phys. Rev. E 78 (2008) 041918
  Virtual J. of Biological Physics Research vol 16 issue 9 (2008)
  
• "Inverse Current-Source Density in three dimensions" Szymon Łęski, Daniel K. Wójcik, Joanna Tereszczuk, Daniel A. Świejkowski, Ewa Kublik, Andrzej Wróbel
  Neuroinformatics 5 (2007) 207
  
• "Quantum maps with space extent: a paradigm for lattice quantum walks" (Invited review) Daniel K. Wójcik
  Int. J. Mod. Phys. B 20 (2006) 1969
  
• "Spatiotemporal chaos: the microscopic perspective" Nicolas Garnier, Daniel K. Wójcik
  Phys. Rev. Lett. 96 (2006) 114101
  
• "Local classifiers for evoked potentials recorded from behaving rats" Wit Jakuczun, Ewa Kublik, Daniel K. Wójcik, and Andrzej Wrobel
  Acta Neurobiologiae Experimentalis 65 (2005) 425
  
• "Classical and Quantum Fluctuation Theorems for Heat Exchange" Chris Jarzynski, Daniel K. Wójcik
  Phys. Rev. Lett. 92 (2004) 230602
  
• "Crossover from Diffusive to Ballistic Transport in Periodic Quantum Maps" Daniel K. Wójcik, J. Robert Dorfman
  Physica D 187 (2004) 223
• "Diffusive-ballistic crossover in 1D quantum walks" Daniel K. Wójcik, J. Robert Dorfman
  Phys. Rev. Lett. 90 (2003) 230602
  Virtual J. of Quantum Information vol 3 issue 6 (2003)
  Foils for "Transport in Quantum Multibakers", Dresden 2002
• "Quantum Multibaker Maps I: Extreme Quantum Regime" Daniel K. Wójcik, J. Robert Dorfman
  Phys. Rev. E 66 (2002) 036110
• "Fractality of certain quantum states" Daniel K. Wójcik, Karol Życzkowski
  preprint: math-ph/0107030
• "Dimension of Interaction Dynamics" Daniel K. Wójcik, Andrzej Nowak, and Marek Kuś
  Phys. Rev. E 63 (2001) 036221
• "Time Evolution of Quantum Fractals" Daniel K. Wójcik, Iwo Białynicki-Birula, and Karol Życzkowski
  Phys. Rev. Lett. 85 (2000) 5022
• "Null Killing Vectors and Reductions of the Self-Duality Equations" Jacek Tafel, Daniel K. Wójcik
  Nonlinearity 11 (1998) 835-844

Conference Proceedings

• "Nonlinearity and Geometry" an editor with Jan Cieśliński;
  Polish Scientific Publishers, 1998.
• Local version

Other

• My Thesis